Scientific Publications

* Corresponding Author; # Equal Contribution; 

2022

Opinion Piece - Schlaeppi A., Adams W., Haase R., Huisken J., MacDonald R., Eliceiri K.*, and Kugler E.*,

Meeting in the middle: towards successful multidisciplinary bioimage analysis collaborations.

Frontiers in Bioinformatics, April 2022 https://doi.org/10.3389/fbinf.2022.889755

Opinion Piece - Jurisch-Yaksi N. #, Kocere A. #, Kugler E. # *, MacDonald R. #, Mosimann C. #, and Yaksi E. #,

Microscopy approaches in zebrafish, RMS inFocus, March 2022

Journal Article - Kugler *, Frost, Silva, Plant,Chhabria, Chico, and Armitage*

Zebrafish Vascular Quantification (ZVQ): a tool for quantification of three-dimensional zebrafish cerebrovascular architecture by automated image analysis, Development, p. dev.199720, Jan. 2022, doi: 10.1242/dev.199720.

2021

Review -  Kugler E., Greenwood J, and MacDonald R.*,

The ”Neuro-Glial-Vascular” Unit: The Role of Glia in Neurovascular Unit Formation and Dysfunction,

Front. Cell Dev. Biol., 27 September 2021, https://doi.org/10.3389/fcell.2021.7328

Spotlight - Barresi M. #, Coen E. #, Kugler E. #, Shuda J. #, and Sung D.#,

Engaging new audiences with imaging and microscopy.

Development 15 September 2021; 148 (18): dev199942. doi: https://doi.org/10.1242/dev.199942 

Journal Article -  Kugler E.*, Snodgrass R., Bowley G., Plant K., Serbanovic-Canic J., Hamilton N., Evans P., Chico T., and Armitage P.,

The effect of absent blood flow on the zebrafish cerebral and trunk vasculature.

Vascular Biology, Online Publication Date: 25 Aug 2021 https://doi.org/10.1530/VB-21-0009

Review - Bowley G. #, Kugler E. #, et al.,

Zebrafish as a tractable model of human cardiovascular disease,

British Journal of Pharmacology, 2021, https://doi.org/10.1111/bph.15473

 

Review - Chico T.* and Kugler E.*,

Cerebrovascular development: mechanisms and experimental approaches,

Cell. Mol. Life Sci., Mar. 2021, doi: 10.1007/s00018-021-03790-1. (Link)

2020

Conference Paper - Kugler E.*, Chico T. and Armitage P.,

Validating Segmentation of the Zebrafish Vasculature,

In: Zheng Y., Williams B., Chen K. (eds) Medical Image Understanding and Analysis. MIUA 2019. Communications in Computer and Information Science, vol 1065. Springer, Cham

2019
Journal Article - Kugler E.*, van Lessen M., Daetwyler S., Chhabria K., Savage A., Silva V., Plant K., McDonald R., Huisken J., Wilkinson R., Schulte-Merker S., Armitage P. and Chico T.*,

Cerebrovascular Endothelial Cells form Transient Notch-Dependent Cystic Structures in Zebrafish,

EMBO Reports, Aug 2019

Conference Abstract - Kugler E., Chhabria K., Daetwyler S., Plant K., Savage A., Wilkinson R., Armitage P., Chico T.J.A.,

Endothelial Cells Form Transient Cystic Structures During Zebrafish Cerebrovascular Development,

Cardiovasc Drugs Ther (2019) 33: 261.


Journal Article - Kugler E.*, Plant K., Chico T. and Armitage P.,

Enhancement and Segmentation Workflow for the Developing Zebrafish Vasculature,

Journal of Imaging, MDPI, Vol. 5, Issue 1.

2018
Journal Article - Chhabria K., Plant K., Bandmann O., Wilkinson R., Martin C., Kugler E., Armitage P., Santoscoy P., Cunliffe V., Howarth C.*, and Chico T.*,

The Effect of Hyperglycemia on Neurovascular Coupling and Cerebrovascular Patterning in Zebrafish,

JCBF


Conference Paper - Kugler E.*, Chico T. and Paul A.,

Image Analysis in Light Sheet Fluorescence Microscopy Images of Transgenic Zebrafish Vascular Development,

In: Nixon, M., Mahmoodi, S. and Zwiggelaar, R., (eds.) Medical Image Understanding and Analysis. MIUA 2018, 09-11 Jul 2018, Southampton, UK. Communications in Computer and Information Science, 894 . Springer Nature Switzerland AG , pp. 343-353. ISBN 9783319959207

2016

Journal Article - Rieder D.*, Amort T., Kugler E., Lusser A. and Trajanoski Z.,

meRanTK: Methylated RNA Analysis ToolKit,

Bioinformatics. 2016 Mar 1;32(5):782-5. doi: 10.1093/bioinformatics/btv647. Epub 2015 Nov 4.

2012

Conference Paper - Schwerte T.*, Stolz S. and Kugler E.,

Preparing and Publishing Wikipedia Articles are a good Tool to train Project Management, Teamwork and Peer Reviewed publishing Processes in Life Sciences,

In: Improving University Teaching. Proceedings of the 37th International Conference "Fostering Knowledge Transfer - Improving University Teaching"